Jan. 2016 - Group Seminar

Basic introduction to Linux, shell, R, bioinformatic and statistics
Day 1
  • Basics Linux
  • Shell/Teminal and useful shell commands
  • Hands-on example using FASTA/FASTQ files
day1.zip
File Size: 1719 kb
File Type: html
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Day 2 and 3
  • Read mapping and alignments
  • Presentation of several tools
  • How to create a searchable database/index  and search with query sequences (Blast, Rapsearch2, Bowtie2)
day2.zip
File Size: 1719 kb
File Type: html
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Day 4 and 5
  • Introduction to R and Rstudio
  • Data types, loops, conditions, functions, ...
  • Data input
  • Plots (standard und ggplots): barplot, density plot, xy-plot, heatmap, boxplot, qqplot, ...
day4.zip
File Size: 1719 kb
File Type: html
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Day 6
  • Manfred